Copy
View this email in your browser

Arctos Happenings

01 April 2019
What is New in Arctos!
Critical Issues Meetings

Arctos users meet on the first Thursday of each month at 10:30 am PST to discuss current critical issues, the next meeting is April 4th. What are the critical issues up for discussion? Check them out before the next Critical Issues Meeting! These are different from the Arctos Working Group meetings that meet the 2nd Thursday each month! Participation in both is highly encouraged and welcomed! An e-mail invite with how to connect was sent to via the Arctos google community listserve. 
Member Comments & Feedback
Denver Museum of Nature & Science's Phyllis Sharp on WoRMS

Until recently, Arctos members could select either Arctos Plants or Arctos (everything else) as their Taxonomic Source.  Beginning December 2018, we uploaded the entire database of the WoRMS – the World Register of Marine Species (http://www.marinespecies.org) - as an additional Source named WoRMS (via Arctos).  Currently, it is being used only by DMNS Marine Invertebrate Collections.  Because the collection includes terrestrial mollusks not necessarily in WoRMS, DMNS occasionally adds needed taxa to WoRMS (via Arctos).

Using the WoRMS (via Arctos) source has dramatically reduced the amount of taxonomic work done by the collection administrators.  In the past, we were adding many taxa every day.  Also, because the classifications in WoRMS (via Arctos) have a unique aphiaID and are automatically updated via webservice, we no longer have to use the Hierarchical Classification Editor to move genera to a different family or make similar changes.  And we know that all taxa in a given genus or family have the same higher taxonomy so they can be easily searched.

But there are occasional surprises.  The automatic update of WoRMS (via Arctos) means that a genus may have been moved to a new family without us being aware of the change.  For example, we were rearranging our Mitridae family and couldn’t find an entry for our specimens of Charitodoron agulhasensis that we labeled in 2017.  That genus had been recently moved to a new family Charitodoronidae Fedosovc, Herrmann, Kantos & Bouchet, 2018.  So keeping our specimens in the exact same organization as our Arctos database is an ongoing task.

Arctos can add additional local sources, links to webservices or a unique taxa database developed by a participating institution. We are in the process of adding classifications from the Paleobiology Database to the Arctos taxonomy source and eventually may be able to add the WoRMS-like functionality of updating them via the PBDB taxon ID.

 Arctos Features Highlight
Data Entry Breakthrough replaces Students!

Entering specimen data just got easier and cheaper! The latest feature in Arctos allows you to take a photo of a specimen data label or spreadsheet and it will convert it into an Arctos specimen record! No more transcription errors and hello more time! 
Okay, Happy April Fool's Day! However, if you are active in the Working Group, you'll be the first to know when we accomplish this and other Arctos breakthroughs! No fooling there! See below in "Become Part of the Arctos Communityto learn how you can participate. 
Now for a real Arctos feature you should use!

You've got GenBank Submissions!

Arctos has a tool that can help you find GenBank submissions to which you haven't linked your specimens. From the main menu select Reports/Services>Find Low-Quality Data>GenBank Discovery Tool.
GenBank Discovery Tool is a script that periodically crawls GenBank looking for sequences that may be related to Arctos specimens and which do not already have an Arctos LinkOut (newly-linked may continue to appear in the table for a few days). 

The results are displayed in a table for ALL Arctos collections and show counts of potential specimen records that are in GenBank but not in Arctos. Scroll down to find your collection(s). This example shows UMNH before we checked the report and added GenBank links.
Click the open GenBank link next to the collection of interest, and you will be rewarded with a list of GenBank records which potentially reference your specimens. You can download the list by selecting Send to.
In the pop-up select Complete Record, File, and Summary format, then Create File.
 
Use Notepad to open the file. You can then copy the text in the file, paste it to an Excel workbook, and with a little manipulation, create a file that can be used with the Identifiers/Relationships Bulkload Tool to get the GenBank IDs added to your specimen records.

Arctos Webinars
 
Arctos started hosting monthly webinars in collaboration with Integrated Digitized Biocollections (iDigBio). For a list of upcoming Arctos webinars or to view past webinars, visit arctosdb.org/learn/webinars/. Webinars are the 2nd Tuesday of the month at 3 p.m. EST.

Upcoming Webinars:
04/09: An Arctos and Aim-Up! Educational Module


Abstract
Recent NSF collaborations such as Aim-UP! (Advancing Integration of Museums into Undergraduate Programs), BLUE (Biodiversity Literacy in Undergraduate Education), and QUBES (Quantitative Undergraduate Biology Education and Synthesis) develop educational modules that leverage the vast information contained in natural history museum archives and cyberinfrastructures to provide collections-based training in large-scale questions for students. This webinar will provide an introduction to a module first developed in Aim-UP! and later expanded in BLUE and QUBES on the theme of Islands as a Tool for Teaching Ecology and Evolution. The module has been used in several ecology and evolutionary courses in home schools, high schools, and undergraduate programs and is an example of how educators can begin to use digital biodiversity data to actively engage students in the scientific process.

Join us via Adobe Connect. Visit https://idigbio.adobeconnect.com/room

Interested in participating in a webinar or have an idea for a webinar? Contact the Arctos working group at arctos-working-group@googlegroups.com.
Arctos Goes to SPNHC*
(*Society of Preservation of Natural History Collections)
 
There is a large contingent of Arctos users headed to Chicago in May for the SPNHC Meetings. We are planning on a trivia night team and an Arctos meeting plus there will have several Arctos themed presentations. If you are interested in meeting with the Arctos group, please fill out this google form so we can get ahold of you. 

 
New Collections Spotlight

We'd like to Welcome the Ohio Wesleyan's Brant Museum of Zoology and Angelo State Natural History Collections into Arctos! 
Ohio Wesleyan's Brant Museum of Zoology houses teaching collections of mammals, birds and their eggs and nests, insects, mollusks, and corals, with smaller collections of other taxa.
This natural history museum features more than 400 mounted birds, including a golden eagle. It draws researchers from across the country, but its collections are used primarily for classroom and laboratory teaching, including helping students to better understand both taxonomic and evolutionary relationships.


Search the Data!
The Biology Department maintains the Angelo State Natural History Collections, which contains nearly 150,000 specimens of all types of living organisms. The collections are preserved, documented and curated assemblages that are important to a wide array of human activities.
The collections are essential to the management of natural resources because they document the diversity and biology of organisms that impact agriculture, health, and urban and other rural activities. They also characterize the ecosystems that we all depend on.
The collections are a resource for many fields of biological research. The presence and growth of the collections at ASU are important to the university, San Angelo and the Concho Valley because they are a readily available local resource for the region.
Interested in joining Arctos or know a collection that is looking for an amazing collection management solution? Have them contact the Arctos Working Group at arctos-working-group@googlegroups.com.

Become Part of the Arctos Community


Arctos is a growing community, with many new developments, and everyone is invited to participate. Please see below for ways you can contribute to the Arctos community and participate in ongoing discussions about improving Arctos for collections management, research, education, and outreach:

1) Subscribe to Arctos Github and Participate in the monthly Critical Issues Meetings! to be able to post and watch issues, comments, suggestions; provide and receive community input.

2) 
Join the Arctos Working Group is open to any participating institution; contribute to Arctos governance, development, and sustainability. We meet monthly. We need one person from each institution on the Arctos Working Group and  GitHub. 

3) Participate in outreach and webinars - help develop the Learn tab on our new website, arctosdb.org

Setting a Data Quality Contact for Your Collection

Each collection needs to have a data quality contact. 
To update collection contact information:
In Actros select Manage Data-->  Metadata --> Manage Collection
Copyright © 2018 ARCTOS COLLECTION MANAGEMENT SOLUTION

To post to this group, send email to arctos@googlegroups.com
To unsubscribe from this group, send email to arctos+unsubscribe@googlegroups.com
Visit this group at https://groups.google.com/d/forum/arctos
For more options, visit https://groups.google.com/d/optout






This email was sent to <<Email Address>>
why did I get this?    unsubscribe from this list    update subscription preferences
Arctos · 1962 Yukon Dr. · Fairbanks, Ak 99775 · USA

Email Marketing Powered by Mailchimp