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Issued: 6 May 2022
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Weekly science news from the Australian Science Media Centre

What do we know about Omicron's ever-growing list of subvariants?

By Rachel McDonald, the Australian Science Media Centre
As the Omicron COVID-19 variant continues its dominance across the world, subvariants are emerging and making their way into Australia. But how worried should we be?

Associate Professor Stuart Turville from the Kirby Institute at UNSW has been researching Omicron since it was first detected in late 2021. He told the AusSMC that variants emerge as a result of small changes which can have big impacts on the way the virus spreads.

"Two viruses dominated in 2021 and they were Delta and to a lesser extent Lambda. They have small changes that made the virus more transmissible and to a certain degree could reduce the potency of an antibody response by roughly 2 fold," A/Prof Turville said.

He said the arrival of Omicron BA1 and BA2 changed that dynamic. Compared to Delta, both these variants have a far greater ability to evade a previous antibody response, whether from vaccination or prior infection. 

"Compared to the modest 2 fold drop in potency observed by Delta, these new variants resulted in a greater than 16 fold drop," he said. 

A/Prof Turville said subvariants currently emerging such as BA4, BA5 and BA2.12.1 have all come from BA2, which appears to have won the race to become the dominant variant right now.

He said some of the changes seen in these new subvariants were also found in other, pre-Omicron variants like Lambda, which was never dominant in Australia, and Delta, which we know to be more transmissible and vaccine-evasive than earlier variants.

"BA4, BA5 and  BA2.12.1, are examples of small changes in the right places. BA2 sublineages are 'whittling away' and are likely becoming fitter in the real world and displacing the original BA1 and BA2," A/Prof Turville said.

He said there were two ways variants became dominant; becoming "fitter" or more easily transmissible, or becoming more "slippery," able to get past existing antibodies people develop through getting vaccinated and/or becoming infected. The changes observed in these subvariants suggest they may become either fitter, slipperier or both, but A/Prof Turville said it would take time to be sure.

"The key thing is that these are small changes in the virus, and not unlike what we have seen before. They may not resemble the large shift we saw with Delta to Omicron," he said.

Whether any of these variants lead to more severe disease will also be important to watch, although A/Prof Turville said gathering enough data on this was a long process.

Researchers use animals to get a head start on figuring out how different variants change the severity of disease, and A/Prof Turville said animal studies of Omicron have shown it may attack the body in a different and therefore less severe way than Delta.

"[Omicron BA1 and BA2] changed the way the virus entered cells. In doing so, it meant the virus infects the upper respiratory tract far better (bronchial tissue), and the lower lung not as well. In animal models, this was observed to result in lower disease severity," he said.

A/Prof Turville said researchers would continue to test these Omicron subvariants to see if they still infect the bronchial tissue rather than the lower lung, and combine that with real-world data to keep an eye on how humans are handling the disease.

"There is still a lot about this virus that is unknown and there are many paths it has the potential to take."

You can read the full Expert Reaction here.
This article originally appeared in Science Deadline, a weekly newsletter from the AusSMC. You are free to republish this story, in full, with appropriate credit. 

QUOTE OF THE WEEK

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RESEARCH HIGHLIGHTS

Aboriginal communities successfully farmed oysters for thousands of years before colonisation (Nature Communications)
Modern oyster farmers have much to learn from Aboriginal communities along the east coast of Australia, according to Aussie and international researchers studying how Indigenous people across the world farmed the salty snacks before colonisation. The researchers say archaeological records and cultural knowledge show oysters were overseen by these communities for up to 10,000 years, with communities including the Quandamooka people still using ancestral knowledge to extend the oyster season. The researchers say this knowledge should be better incorporated into current management of oyster reefs rather than relying on post-colonisation knowledge.  Research from:  Australia; VIC; QLD. 
Example coverage: Indigenous people sustainably harvested oysters for thousands of years before European colonisation, study finds | ABC


Pathways to severe COVID-19 in children discovered (Nature Communications)
Researchers have discovered the blood clotting and immune protein pathways that are activated in severe cases of COVID-19 in children, paving the way for earlier diagnosis and more targeted treatments.  Research from:  Australia; International; NSW; VIC. 
Example coverage: Australian researchers uncover clue to rare and severe response to Covid in children | The Guardian


Almost 2-in-3 Aussies say a cigarette sales ban would be a 'good thing'  (Tobacco Control)
A survey has found that almost two-thirds of Australians think it would be ’a good thing’ if there came a time when it  was no longer legal to sell cigarettes in shops in Australia. The national survey found that only 16.7 per cent thought it would be ’a bad thing’. Around half of those who responded to the survey said they would support the phasing out of cigarette sales over a defined period of time, with most supporting a 10 year time frame. Research from:  Australia; VIC.
Example coverage: Nearly Two Thirds Of Aussies Support Move To Ban Sale Of Cigarettes In Australia | LadBible


Venus and Jupiter to get hearts racing with spectacular celestial 'kiss'  
Early risers are in for a celestial treat this weekend when four planets in our solar system align in a once-in-a-thousand-year event, culminating in a "romantic" display between Venus and Jupiter.   Research from:  Australia; ACT. 
Example coverage: ‘Super bright’: Stars align as Venus and Jupiter set to light up the sky | Sydney Morning Herald

AusSMC ON THE AIRWAVES

This week, we joined Adam Steer on ABC Darwin to talk tired magpies and paranormal beliefs. We also joined Jordan Curtis on 5CS this week for Classic Hits Breakfast, and we'll be chatting with him again on Monday morning.
The Australian Science Media Centre (AusSMC) works to enhance the media’s coverage of science, for the benefit of all Australians. We provide the evidence and experts when science hits the headlines and administer the breaking science news portal for Australia and New Zealand – Scimex.org. As an independent, not-for-profit organisation, financial support is crucial to ensure this important work can continue. For a full list of current supporters visit our website.

Disclaimer: Please note that any views expressed are the personal opinions of the experts named. They do not represent the views of the AusSMC or any other organisation unless specifically stated. The AusSMC attempts to provide a range of views from the scientific community.
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