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Biochemistry and Molecular Biophysics
E-Newsletter


View this email in your browser                                                                                Fall 2020/Winter 2021 Issue 

 
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CONTENTS

From the Chair

Faculty News

Student Awards

Department Events

In Memorium

Thesis Examinations

New BMB Arrivals

Research Awards

Seminar Schedule

Latest Publications
From the Chair
Dear BMB Nation,
 
I’d like to extend a warm welcome back to everyone for another academic year. No one probably imagined having to adjust to the prolonged changes to both our personal and work lives that this pandemic has brought. Nonetheless, although I still have some pandemic-induced days that are frustrating, I see how science has battled Covid and become energized that our scientific work will make a difference in the world. I have not been here long, but already I see the support each of you give to your colleagues, classmates, and friends. My transition here to this department has equally been smooth due to the friendly environment and interactions with everyone. Thank you again to John Cooper for all of his prior leadership for this department. Science has moved forward within the department despite all the hurdles and distractions thrown your way over the last year (just see all the recent publications!), and I expect the department to continue all of this outstanding work. This coming year will bring some new changes and opportunities, all with the goal of enhancing our BMB scientific community. I hope everyone realizes that even the smallest of effort and participation can make a huge impact, and I encourage everyone to have your voice heard in all we do this year. Looking forward to working with you!
 
Best,
Ben

Benjamin A. Garcia, Ph.D., FRSC.
Raymond H. Wittcoff Distinguished Professor and Chair
Faculty News
Faculty Spotlight - Dr. Michael Greenberg

The Heart of Research
 
As we uncover previously unknown truths about the world surrounding us, scientific research becomes more complex making interdisciplinary research vital to the progress of human health.
 
Dr. Michael Greenberg is an Assistant Professor of Biochemistry and Molecular Biophysics who has made the very core of his lab interdisciplinary in nature. Greenberg’s lab is at the epicenter of biochemistry, biophysics, and cellular biology. His lab studies cytoskeletal motors using physics to explain cellular movements.
 
To continue reading, please
 click here.
Dr. Elliot Elson elected to the National Academy of Sciences

Elliot L. Elson, PhD, an emeritus professor in the Department of Biochemistry and Molecular Biophysics at Washington University School of Medicine in St. Louis, has been elected to the National Academy of Sciences.

Elson is among 120 new members and 30 international associates elected to the National Academy of Sciences this year. Election to the academy is considered one of the highest honors that can be awarded to a U.S. scientist or engineer. The newest members, announced April 26, bring the total number of active members to 2,461 and the number of international members to 511. International members hold citizenship outside the U.S. and are nonvoting members of the academy.

To read the full story, please click here.

Dr. Michael Kinch published a new book entitled:
"The Price of Health - The Modern Pharmaceutical Enterprise and the Betrayal of a History of Care"

From "pharma bros" to everyday household budgets, just how did the pharmaceutical industry betray its own history—and how can it return to its tradition of care?

It’s an unfortunate and life-threatening fact: one in five Americans has skipped vital prescriptions simply because of the cost. These choices are being made even though we have reached a point in the conveyance of medical options where cancers can be cured and sight restored for those blinded by rare genetic disorders. How, in this time of such advancements, did we reach a point where people cannot afford the very things that could save their lives?

To continue reading the book description, please
 click here.

NPR Media Appearance on April 15, 2021, with St Louis Public Radio, St Louis on the Air, please click here to listen.

Dr. Michael Kinch and COVID-19 

Throughout the 2021 year, Dr. Michael Kinch lent his expertise in drug and vaccine development to various media outlets through interviews, essays, opinion pieces, and publications. 

To view any of those activities, please
 click here.

Folding@home project has created the first exascale computer

The Folding@home project, lead by Dr. Greg Bomwan, has created the world’s first exascale computer (5x the performance of the world’s fastest supercomputer) and used it to help understand how the SARS-CoV-2 virus evades our immune systems. This feat was covered by various media outlets, including Forbes, the Financial Times, and NPR.

To view those features, please click on the links below.  

The Financial Times, please click here.

Forbes, please click here.

NPR, please click here

Washington University School of Medicine Admissions Recognition

Dr. Kathleen Hall was promoted to serve as a senior member of the Washington University School of Medicine Committee on Admissions in recognition of her contributions and dedication to the WUSM Admissions process.

Student Awards
2021 Ceil M. DeGutis Prize Fellow:
Mr. Gregory Harrison is a 5th year PhD student in the Molecular Microbiology and Microbial Pathogenesis program. His current research in the lab of Dr. Christina Stallings focuses on drug resistance and drug tolerance in the pathogen Mycobacterium tuberculosis. He grew up just outside of Chicago and moved to St. Louis to attend Washington University in St. Louis for his undergraduate degree in molecular biology. During his undergraduate studies, he joined the lab of Dr. Barbara Kunkel, where he studied mechanisms by which the plant pathogen Pseudomonas syringae senses and responds to the molecular signals within the plant. 

For more information on Gregory, please click here.

The DeGutis award is presented to a senior graduate student, in their fifth or sixth year of graduate study, who has made a significant contribution to the field of Chemical Biology or Medicinal Chemistry disciplines broadly defined.

2020 Elliot Elson Fellow:

Mr. Matthew A. Cruz joined the lab of Dr. Gregory Bowman in the department of Biochemistry and Molecular Biophysics where he studies the relationship between an ebolavirus protein's structural dynamics and its function. Through computational and experimental techniques he is measuring how changes in protein dynamics affect RNA binding. Matthew is applying this research to find drugs that disrupt protein dynamics to combat ebolavirus infections.

Matthew received his B.S. in Biochemistry and Cell Biology from Rice University in 2017. He then joined the Division of Biological and Biomedical Sciences at Washington University in St. Louis as part of the Biochemistry, Biophysics, and Structural Biology program.

For more information on Matthew, please click here.

In 2016, this award was created to recognize the outstanding contributions of Dr. Elson as a mentor and educator of researchers in training. This award supports educational opportunities for outstanding students and post-doctoral trainees in the Department of Biochemistry and Molecular Biophysics.
BMB Department Events

Working Smarter - Strategic Planning and Time Management Basics Session

On March 5th, 2021, Dr. Thi Nguyen presented a workshop on “Working Smarter – Strategic Planning & Time Management Basics”.

To watch this presentation, please
 click here.

BMB Wellness Session

On April 28, 2021, the Department hosted a special session entitled “Evidence-based Practices that Support Mental and Emotional Well-being”. Ms. Krista Jarvis, Clinical Case Manager and Program Manager in the Department of Psychiatry at Washington University, walked the group through five different evidence-based practices for our mental and emotional well-being. These practices are designed to help each individual feel empowered to utilize a variety of simple techniques for stress reduction in these challenging times. 

If you would like to view this session, please click here
.

In Memorium:
Dr. Linda Kurz, Emeritus Research Faculty Member, 88

Dr. Linda Kurz, emeritus research faculty member of our department, died on December 17, 2020, at home in rural Franklin County. She was 74.

Dr. Kurz worked with Drs. Carl Frieden and George Drysdale for many years, investigating enzyme mechanisms. She was a true biochemist, as hard-core as they come. She retired a few years ago, and many of us overlapped with her for a substantial period of time. I believe she gets credit for the sign on the Frieden lab door saying “if we knew what we were doing, it wouldn’t be research.”

To read more, including remembrances from colleagues click here.

PhD Thesis Examinations
Sarah Clippinger Schulte in the Biochemistry, Biophysics, and Structural Biology program in the laboratory of Dr. Michael Greenberg. Her thesis was entitled "Dissecting the Molecular Mechanism of Familial Cardiomyopathies".
George Katumba in the Biochemistry, Biophysics, and Structural Biology program in the laboratory of Dr. Jeff Henderson. His thesis was entitled "Copper-mediated Regulation of a Traditional Iron Acquisition System in Uropathogenic Escherichia coli".
Catherine Knoverek in the Computational & Molecular Biophysics program in the laboratory of Dr. Greg Bowman. Her thesis was entitled "The Role of Excited States in Determining β-lactamase Function and Bacterial Fitness".
Patrick Judge in the Biochemistry, Biophysics, and Structural Biology program in the laboratory of Dr. Alexander Barnes. His thesis was entitled "Method Development for Enhancing Sensitivity of Dynamic Nuclear Polarization Nuclear Magnetic Resonance Spectroscopy for Structural Studies of PKC-Drug Interactions".
Kacey Mersch in the Molecular Physiology and Biophysics program (University of Iowa) in the laboratory of Dr. Janice Robertson. His thesis was entitled "Protein Determinants of CLC-ec1 Dimerization".
BMB Department Welcomes...
Soumendranatha Bhakat - Postdoctoral Fellow in Dr. Gerg Bowman's lab.
Natarajan Bhanu - Lab Manager in Dr. Benjamin Garcia's lab.
Zhenfu Han -Senior Scientist in Dr. Jim Janetka's lab.
Kimberly Hughes - Special Project Administrator in the Department Administration office.
Xingyu Liu - Postdoctoral Fellow in Dr. Benjamin Garcia's lab.
Peder Lund - Postdoctoral Researcher in Dr. Benjamin Garcia's lab.
Mariana Lund - Postdoctoral Fellow in Dr. Benjamin Garcia's lab.
Faith Robison - Mass Spectrometry Manager in Dr. Benjamin Garcia's lab.
Louis Smith - Postdoctoral Fellow in Dr. Greg Bowman's lab.
Yixuan (Axe) Xie - Postdoctoral Fellow in Dr. Benjamin Garcia's lab.
Lianjie (Jerry) Wei - Graduate Student in Dr. Natalie Niemi's lab.
Jin Ye - Postdoctoral Fellow in Dr. Weikai Li's lab.
Jianwei Zeng - Postdoctoral Fellow in Dr. Rui Zhang's lab.
Research Awards

Jhullian Jamille Alston, BA, Pre-Doc Trainee in the Department of Biochemistry and Molecular Biophysics, and the laboratories of Alex Holehouse, PhD and Andrea Soranno, PhD, received a Predoctoral to Postdoctoral Fellow Transition Award from the National Cancer Institute for his research entitled “Single Molecule Biophysics of Intrinsically Disordered Proteins in Disease”.


Greg Bowman, PhD, Associate Professor of Biochemistry and Molecular Biophysics, along with Guojun Bu, Professor of Medicine and chair of the Department of Neuroscience, Mayo Clinic, received a five-year U19 Research Program – Cooperative Agreement Award from the National Institutes of Health, National Institute on Aging, entitled “Biology and pathobiology of apoE in aging and Alzheimer's disease”. Dr. Bowman is leader of the project’s biochemical & structural biology core.


Peter M. Burgers, PhD, Marvin A. Brennecke Professor of Biological Chemistry, Department of Biochemistry and Molecular Biophysics was awarded a five-year MIRA grant renewal from the National Institute of General Medical Sciences for his research entitled “Mechanisms of DNA replication and maintenance in eukaryotes”.



Matthew A Cruz, BS, Pre-Doc Trainee in the Department of Biochemistry and Molecular Biophysics, and the laboratory of Gregory Bowman, PhD, received a new three-year fellowship award from the National Institutes of Health, National Institute of Allergy and Infectious Diseases for his research entitled “Leveraging protein dynamics to drug filovirus protein-nucleic acid interactions using simulations and experiments”.
 

Roberto Galletto, PhD, Associate Professor in the Department of Biochemistry and Molecular Biophysics was awarded a new five-year MIRA grant from the National Institute of General Medical Sciences for his research entitled “Functions of DNA helicases at hard-to-replicate sites and telomere regulation”.



Benjamin Garcia, PhD, Raymond H. Wittcoff Distinguished Professor and Head of Biochemistry and Molecular Biophysics, along with Matthew D. Weitzman, PhD, Professor of Microbiology and Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine and Children's Hospital of Philadelphia, received a five-year grant renewal from the National Institute of Allergy and Infectious Diseases for their research entitled “Viral modulation of epitranscriptomic mechanisms”.
 

Benjamin Garcia, PhD, Raymond H. Wittcoff Distinguished Professor and Head of Biochemistry and Molecular Biophysics, along with Philip A Cole, MD, PhD, Professor of Biological Chemistry & Molecular Pharmacology at Harvard Medical School, received a new three-year grant award from The National Science Foundation for their research entitled “Collaborative Research: MFB: Deciphering the Logic of PTM Crosstalk via Novel Chemical Technology: Histones and Beyond”.
 

Daniel Griffith, BS, Pre-Doc Trainee in the Department of Biochemistry and Molecular Biophysics, and the laboratory of Alex Holehouse, PhD, received a new three-year Graduate Research Fellowship award from the National Science Foundation for his research entitled Investigating the molecular grammar driving the assembly of membraneless-organelles.



Alex Holehouse, PhD, Assistant Professor of Biochemistry and Molecular Biophysics, along with Shahar Sukenik, Assistant Professor of Chemistry & Biochemistry at the University of California, Merced, and Thomas Boothby, Assistant Professor of Molecular Biology, University of Wyoming, received a new four-year grant award from the National Science Foundation through the new “Integrative Research in Biology” mechanism for their research entitled “Collaborative Research: Functional Synergy Between Disordered Proteins and their Environment in Desiccation Protection”.
 

Jim Janetka, PhD, Professor of Biochemistry and Molecular Biophysics, along with Scott Hultgren, Helen L. Stoever Professor of Molecular Microbiology, Michael Caparon, Professor of Molecular Microbiology, Peng Yuan, Associate Professor of Cell Biology and Physiology, and Ali Ellebedy, Associate Professor of Pathology and Immunology received a five-year U19 Research Program--Cooperative Agreement Award from the National Institutes of Health, National Institute of Allergy and Infectious Diseases entitled “Innovative Strategies to Combat Antibiotic-resistant Infections”. Dr. Janetka is leader of the project scientific core named “Rational Design and Synthesis of Small Molecule Inhibitors Targeting Unique Pathogenic Mechanisms in Gram- and Gram+ Bacteria Important in UTI”.
 

Jim Janetka, PhD, Professor of Biochemistry and Molecular Biophysics, Makedonka Mitreva, Professor of Medicine and Genetics, and Raffi Aroian, Professor of Molecular Medicine at the University of Massachusetts Medical School have received a new multi-PI R01 award from the National Institutes of Health, National Institute of Allergy and Infectious Diseases entitled “Development of small molecule inhibitors of metabolic enzymes as broad-spectrum anthelmintic drugs”.

 

Natalie M. Niemi, PhD, Assistant Professor of Biochemistry and Molecular Biophysics, received a one-year pilot and feasibility grant award from the Washington University Diabetes Research Center (DRC), sponsored by the National Institutes of Health, National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) for her research entitled “The role of the mitochondrial phosphatase Pptc7 in enabling metabolic flexibility”.



Janice L Robertson, PhD, Assistant Professor of Biochemistry and Molecular Biophysics received a four-year renewal from the National Institute of General Medical Sciences for her research entitled “Driving forces of membrane protein assembly in membranes”.


Andrea Soranno, PhD, Assistant Professor of Biochemistry and Molecular Biophysics, Carl Frieden, Professor of Biochemistry and Molecular Biophysics, and Rui Zhang, Assistant Professor of Biochemistry and Molecular Biophysics will collaborate in the Project named “ApoE isoform-specific structure: insights on biology and pathobiology”. The Project is part of the newly awarded five-year U19 Research Program from the National Institutes of Health, National Institute of Aging, entitled “Biology and pathobiology of apoE in aging and Alzheimer’s disease”, helmed by Dr. David Holtzman, Professor and Chair of Neurology at Washington University, in St Louis, and Dr. Guojun Bu, Professor of Medicine and Chair of Neuroscience at the Mayo Clinic. 

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2021 Fall Seminar Schedule:

September 21, 2021

BMB Seminar
Courtney Reichhardt, Ph.D.
Washington University in Saint Louis
Untangling the assembly of microbial biofilm matrices"



October 5, 2021

BMB Seminar
Vera Moiseenkova-Bell, Ph.D.
University of Pennsylvania
“Structural Insights into TRPV Channel Gating”



October 12, 2021

BMB Seminar
Arpita Upadhyaya, Ph.D.
University of Marylan
Transcription factor dynamics in gene expression: the long and short of it



October 19, 2021

BMB Seminar
Bin Zhang, Ph.D.
Massachusetts Institute of Technology
Phase separation in genome organization



October 26, 2021

BMB Seminar
Sua Myong, Ph.D.
Johns Hopkins University 
My Adventure into Disorderedness



November 2, 2021

BMB Seminar
Alexandra Newton, Ph.D.
University of California, San Diego
PKC: Release from Quarantine by mTORC2



November 9, 2021

BMB Seminar
Elizabeth Rhoades, Ph.D.
University of Pennsylvania
Functional mechanisms of dysfunctional proteins



November 16, 2021

BMB Seminar 
Jonathan Kirk, Ph.D.
Loyola University 
Cardiac Sarcomere Protein Quality Control: Repairing the Engine without Stopping the Car



November 23, 2021

BMB Seminar
Jan Brugues, Ph.D.
Max Planck Institute of Molecular Cell Biology and Genetics
“TBA”



November 30, 2021

BMB Seminar
Tim Craggs, Ph.D.
University of Sheffield
“TBA”




December 7, 2021

BMB Seminar
Lucia Chemes, Ph.D.
Fundación Instituto Leloir
“TBA”



December 14, 2021

BMB Seminar 
Laura Lynn Lackner, Ph.D.
Northwestern University 
The multifunctional nature of mitochondrial contact site proteins


(All seminars will be presented over Zoom. If you would like the zoom link for a specific seminar or if you would like to be added to our seminar notification email list, please email torresm@wustl.edu.)



Latest Publications (in date order):

Wong NR, Mohan J, Kopecky BJ, Guo S, Du L, Leid J, Feng G, Lokshina I, Dmytrenko O, Luehmann H, Bajpai G, Ewald L, Bell L, Patel N, Bredemeyer A, Weinheimer CJ, Nigro JM, Kovacs A, Morimoto S, Bayguinov PO, Fisher MR, Stump WT, Greenberg MJ, Fitzpatrick JA, Epelman S, Kreisel D, Sah R, Liu Y, Hu H, Lavine KJ. “Resident cardiac macrophages mediate adaptive myocardial remodeling”. Immunity. 2021 Sep 14;54(9):2072-2088.e7. doi: 10.1016/j.immuni.2021.07.003. Epub 2021 Jul 27. (Abstract)


Papadaki M, Kampaengsri T, Barrick SK, Campbell SG, von Lewinski D, Rainer PP,  Harris SP, Greenberg MJ, Kirk JA. “Myofilament glycation in diabetes reduces contractility by inhibiting tropomyosin movement, is rescued by cMyBPC domains”. J Mol Cell Cardiol. 2021 Sep 3;162:1-9. doi: 10.1016/j.yjmcc.2021.08.012. Online ahead of print. (
Abstract)


Emenecker, R. J., Griffith, D., & Holehouse, A. S. "Metapredict: a fast, accurate, and easy-to-use predictor of consensus disorder and structure". Biophysical Journal. 2021 September 2. (In Press) (
Abstract)


Taneja, I., & Holehouse, A. S. "Folded domain charge properties influence the conformational behavior of disordered tails". Current Research in Structural Biology. 2021;3:216-228 (
Abstract


Griffith, D., & Holehouse, A. S. "PARROT is a flexible recurrent neural network framework for analysis of large protein datasets". eLife 2021;10:e70576 DOI: 10.7554/eLife.70576 (
Abstract)


Green AM, DeWeerd RA, O'Leary DR, Hansen AR, Hayer KE, Kulej K, Dineen AS, Szeto JH, Garcia BA, Weitzman MD. "Interaction with the CCT chaperonin complex limits APOBEC3A cytidine deaminase cytotoxicity". EMBO Rep. 2021 Sep 6;22(9):e52145. doi: 10.15252/embr.202052145. Epub 2021 Aug 4. PMID: 34347354 (
Abstract)

 
Xu SJ, Lombroso SI, Fischer DK, Carpenter MD, Marchione DM, Hamilton PJ, Lim CJ, Neve RL, Garcia BA, Wimmer ME, Pierce RC, Heller EA. "Chromatin-mediated alternative splicing regulates cocaine-reward behavior". Neuron. 2021 Aug 31:S0896-6273(21)00603-6. doi: 10.1016/j.neuron.2021.08.008. Online ahead of print. PMID: 34480866 (
Abstract)
 

Dybas JM, Lum KK, Kulej K, Reyes ED, Lauman R, Charman M, Purman CE, Steinbock RT, Grams N, Price AM, Mendoza L, Garcia BA, Weitzman MD. "Adenovirus Remodeling of the Host Proteome and Host Factors Associated with Viral Genomes". mSystems. 2021 Aug 31:e0046821. doi: 10.1128/mSystems.00468-21. Online ahead of print. PMID: 34463575 Free article. (
Abstract)


Zhou F, Yang Y, Chemuru S, Cui W, Liu S, Gross M, Li W. "Footprinting Mass Spectrometry of Membrane Proteins: Ferroportin Reconstituted in Saposin A Picodiscs". Anal Chem. 2021 Aug 24;93(33):11370-11378. doi: 10.1021/acs.analchem.1c02325. PMID: 34383472 (
Abstract)


Dorone, Y., Boeynaems, S., Flores, E., Jin, B., Hateley, S., Bossi, F., Lazarus, E., Pennington, J. G., Michiels, E., De Decker, M., Vints, K., Baatsen, P., Bassel, G. W., Otegui, M. S., Holehouse, A. S., Exposito-Alonso, M., Sukenik, S., Gitler, A. D., & Rhee, S. Y. "A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation". Cell. 2021 Aug 5;184(16), 4284–4298.e27. (
Abstract)


Niemi NM & Pagliarini DJ. "The extensive and functionally uncharacterized mitochondrial phosphoproteome". Jour of Biol Chem. 2021 July;297(1), 100880. (
Abstract)


Vithani N, Ward MD, Zimmerman MI, Novak B, Borowsky JH, Singh S, Bowman GR. "SARS-CoV-2 Nsp16 activation mechanism and a cryptic pocket with pan-coronavirus antiviral potential". Bio Jour. 2021 July 20;120(14):2880-2889. (
Abstract)


Bear AS, Blanchard T, Cesare J, Ford MJ, Richman LP, Xu C, Baroja ML, McCuaig S, Costeas C, Gabunia K, Scholler J, Posey AD Jr, O'Hara MH, Smole A, Powell DJ Jr, Garcia BA, Vonderheide RH, Linette GP, Carreno BM.  "Biochemical and functional characterization of mutant KRAS epitopes validates this oncoprotein for immunological targeting". Nat Commun. 2021 Jul 16;12(1):4365. doi: 10.1038/s41467-021-24562-2. PMID: 34272369 Free PMC article. (
Abstract)
 

Zimmerman MI, Porter JR, Ward MD, Singh S, Vithani N, Meller A, Mallimadugula UL, Kuhn CE, Borowsky JH, Wiewiora RP, Hurley MFD, Harbison AM, Fogarty CA, Coffland JE, Fadda E, Voelz VA, Chodera JD, & Bowman GR. “SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome”. Nat Chem. 2021 Jul;13(7):651-659. doi: 10.1038/s41557-021-00707-0. (
Abstract)


Hao L, Zhang R, Lohman TM. "Heterogeneity in E. coli RecBCD Helicase-DNA binding and base pair melting". J Mol Biol. 2021 Jul 8:167147. doi: 10.1016/j.jmb.2021.167147. Online ahead of print. PMID: 34246654 (
Abstract)


Minhas, S., & Holehouse, A. S. "Step on the cGAS! Viral inhibition of cGAS phase separation with cytosolic DNA". 2021 July 1, Molecular Cell, 81(13), 2688–2689. (
Abstract)


Wang X, Fu Y, Beatty WL, Ma M, Brown A, Sibley DL & Zhang R. “Cryo-EM structure of cortical microtubules from human parasite Toxoplasma gondii identifies their microtubule inner proteins”. Nature Communications. 2021 June 25; 12, Article number: 3065. (
Abstract)


Barrick SK, Greenberg L, & Greenberg MJ. “A Troponin T Variant Linked with Pediatric Dilated Cardiomyopathy Reduces the Coupling of Thin Filament Activation to Myosin and Calcium Binding”. Mol Biol Cell. 2021 Jun 23; mbcE21020082. doi: 10.1091/mbc.E21-02-0082. Online ahead of print. (
Abstract)


Tannous EA & Burgers PM. “Novel insights into the mechanism of cell cycle kinases Mec1(ATR) and Tel1(ATM)”. Crit Rev Biochem Mol Biol. 2021 Jun 20;1-14. doi: 10.1080/10409238.2021.1925218. Online ahead of print. (Abstract)


Heath GR, Kots E, Robertson JL, Lansky S, Khelashvili G, Weinstein H, & Scheuring S. “Localization atomic force microscopy". Nature. 2021 Jun;594(7863):385-390. doi: 10.1038/s41586-021-03551-x. Epub 2021 Jun 16. (Abstract)


Schulze S, Pfeiffer F, Garcia BA, Pohlschroder M. "Comprehensive glycoproteomics shines new light on the complexity and extent of glycosylation in archaea". PLoS Biol. 2021 Jun 17;19(6):e3001277. doi: 10.1371/journal.pbio.3001277. eCollection 2021 Jun. PMID: 34138841 Free PMC article. (Abstract)


Ernst M & Robertson JL. “The Role of the Membrane in Transporter Folding and Activity”. J Mol Biol. 2021 Jun 15;167103. doi: 10.1016/j.jmb.2021.167103. Online ahead of print. (
Abstract)


Bernetti M, Hall KB, & Bussi G. “Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles”. Nucleic Acids Res. 2021 Jun 9;gkab459. doi: 10.1093/nar/gkab459. Online ahead of print. (Abstract)


Faylo JL, van Eeuwen T, Kim HJ, Gorbea Colón JJ, Garcia BA, Murakami K, Christianson DW. "Structural insight on assembly-line catalysis in terpene biosynthesis". Nat Commun. 2021 Jun 9;12(1):3487. doi: 10.1038/s41467-021-23589-9. PMID: 34108468 Free PMC article. (Abstract)


van Eeuwen T, Shim Y, Kim HJ, Zhao T, Basu S, Garcia BA, Kaplan CD, Min JH, Murakami K. "Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair". Nat Commun. 2021 Jun 7;12(1):3338. doi: 10.1038/s41467-021-23684-x. PMID: 34099686 Free PMC article. (
Abstract)


Emenecker, R. J., Holehouse, A. S*., & Strader, L. C.* "Sequence determinants of in cell condensate morphology, dynamics, and oligomerization as measured by number and brightness analysis". Cell Communication and Signaling. 2021 Jun 5. 19(1), 65.doi: 10.1186/s12964-021-00744-9 (
Abstract)


Kiktev DA, Dominska M, Zhang T, Dahl J, Stepchenkova EI, Mieczkowski P, Burgers PM, Lujan S, Burkholder A, Kunkel TA, & Petes TD. “The fidelity of DNA replication, particularly on GC-rich templates, is reduced by defects of the Fe-S cluster in DNA polymerase δ”. Nucleic Acids Res. 2021 Jun 4;49(10):5623-5636. doi: 10.1093/nar/gkab371. (
Abstract)


Riedel SS, Lu C, Xie HM, Nestler K, Vermunt MW, Lenard A, Bennett L, Speck NA, Hanamura I, Lessard JA, Blobel GA, Garcia BA, Bernt KM. "Intrinsically disordered Meningioma-1 stabilizes the BAF complex to cause AML". Mol Cell. 2021 Jun 3;81(11):2332-2348.e9. doi: 10.1016/j.molcel.2021.04.014. PMID: 33974912 (Abstract)


Lu C, Coradin M, Janssen KA, Sidoli S, Garcia BA. "Combinatorial Histone H3 Modifications Are Dynamically Altered in Distinct Cell Cycle Phases". J Am Soc Mass Spectrom. 2021 Jun 2;32(6):1300-1311. doi: 10.1021/jasms.0c00451. PMID: 33818074 (
Abstract)


Nguyen B, Shinn MK, Weiland E, & Lohman TM. “Regulation of E. coli Rep helicase activity by PriC”. J Mol Biol. 2021 Jun 1;433(15):167072. doi: 10.1016/j.jmb.2021.167072. Online ahead of print. (
Abstract)


Burgie, E. S., Gannam, Z. T. K., McLoughlin, K. E., Sherman, C. D., Holehouse, A. S., Stankey, R. J., & Vierstra, R. D. "Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families". Proceedings of the National Academy of Sciences of the United States of America. 2021 June 1. 118(22) e2105649118. (Abstract)


Nguyen B, Kyung Shinn M, Weiland E, Lohman TM. "Regulation of E. coli Rep Helicase Activity by PriC". J Mol Biol. 2021 May 31:167072. doi: 10.1016/j.jmb.2021.167072. Online ahead of print. PMID: 34081984 (
Abstract)


Ward MD, Zimmerman MI, Meller A, Chung M, Swamidass SJ, & Bowman GR. “Deep learning the structural determinants of protein biochemical properties by comparing structural ensembles with DiffNets”. Nat Commun. 2021 May 21;12(1):3023. doi: 10.1038/s41467-021-23246-1. (
Abstract)


Kiktev DA, Dominska M, Zhang T, Dahl J, Stepchenkova EI, Mieczkowski P, Burgers PM, Lujan S, Burkholder A, Kunkel TA, Petes TD. "The fidelity of DNA replication, particularly on GC-rich templates, is reduced by defects of the Fe-S cluster in DNA polymerase δ". Nucleic Acids Res. 2021 May 21:gkab371. doi: 10.1093/nar/gkab371. Online ahead of print. PMID: 34019669 (Abstract)


Mahoney M, Damalanka VC, Tartell MA, Chung DH, Lourenco AL, Pwee D, Mayer Bridwell AE, Hoffmann M, Voss J, Karmakar P, Azouz N, Klingler AM, Rothlauf PW, Thompson CE, Lee M, Klampfer L, Stallings C, Rothenberg ME, Pöhlmann S, Whelan SP, O’Donoghue AJ, Craik CS, & Janetka JW. “A novel class of TMPRSS2 inhibitors potently block SARS-CoV-2 and MERS-CoV viral entry and protect human epithelial lung cells”. bioRxiv. 2021 May 6;2021.05.06.442935. doi: 10.1101/2021.05.06.442935. Preprint (
Abstract)


Clippinger SR, Cloonan PE, Wang W, Greenberg L, Stump WT, Angsutararux P, Nerbonne JM, & Greenberg MJ. “Mechanical dysfunction of the sarcomere induced by a pathogenic mutation in troponin T drives cellular adaptation”. J Gen Physiol. 2021 May 3;153(5):e202012787. doi: 10.1085/jgp.202012787. (Abstract)


Kozlov AG, Lohman TM. "Probing E. coli SSB protein-DNA topology by reversing DNA backbone polarity". Biophys J. 2021 Apr 20;120(8):1522-1533. doi: 10.1016/j.bpj.2021.02.025.  PMID: 33636169 (Abstract)


Chadda R, Bernhardt N, Kelley EG, Teixeira SC, Griffith K, Gil-Ley A, Öztürk TN, Hughes LE, Forsythe A, Krishnamani V, Faraldo-Gómez JD, & Robertson JL. “Membrane transporter dimerization driven by differential lipid solvation energetics of dissociated and associated states”. Elife. 2021 Apr 7;10:e63288. doi: 10.7554/eLife.63288. (
Abstract)


Cubuk J, Alston JJ, Incicco JJ, Singh S, Stuchell-Brereton MD, Ward MD, Zimmerman MI, Vithani N, Griffith D, Wagoner JA, Bowman GR, Hall KB, Soranno A & Holehouse AS. "The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA". Nat. Comm. 29 March 2021; 12, Article number: 1936. (
Abstract)


Jensen D, Galburt EA. "The Context-Dependent Influence of Promoter Sequence Motifs on Transcription Initiation Kinetics and Regulation". J Bacteriol. 2021 Mar 23;203(8):e00512-20. doi: 10.1128/JB.00512-20. PMID: 33139481 Review. (
Abstract)


Li W. "Targeting multiple enzymes in vitamin K metabolism for anticoagulation". J Thromb Haemost. 2021 Mar;19(3):633-636. doi: 10.1111/jth.15212. (
Abstract)


Sankaranarayanan, M., Emenecker, R. J., Jahnel, M., Trussina, I. R. E., Wayland, M., Alberti, S., Holehouse, A. S., & Weil, T. T. "The arrested state of processing bodies supports mRNA regulation in early development". Developmental Cell, 2021 Mar 16 (In Press), 2021.03.16.435709. (Abstract)


Cheng M, Guo C, Li W, & Michael L. Gross ML. “Free-Radical Membrane Protein Footprinting by Photolysis of Perfluoroisopropyl Iodide Partitioned to Detergent Micelle by Sonication”. Angew Chem Int Ed Engl. 2021 Mar 10. doi: 10.1002/anie.202014096. Online ahead of print. (
Abstract)


Kozlov AG Lohman TM. “Probing E. coli SSB Protein-DNA topology by reversing DNA backbone polarity”. Biophys J. 2021 Apr 20;120(8):1522-1533. doi: 10.1016/j.bpj.2021.02.025. Epub 2021 Feb 23. (
Abstract)


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