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Marine Data News Issue 47
March 2021
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In this issue of Marine Data News...
MEDIN launches online workshop

The Marine Environmental Data and Information Network (MEDIN​) and OceanWise are delighted to announce the premiere of our online workshop: Marine Data Management, Governance and the MEDIN toolset.

The course will take place over 5 days from the 19th to the 23rd of April​, with live lessons in the morning and independent learning in the afternoons. Places are limited so please register on OceanTeacher Global Academy here as soon as possible to avoid disappointment.

This training course is suitable for anyone responsible for collecting or managing marine environmental data in the public sector, industry or for education or research. Familiarity with different marine data types, and how data is acquired and used, would be helpful but not essential. Prior knowledge or practical experience of data management is not required.    

The course can be taken as a whole, or attendees can select modules according to two streams: ​Marine Data Governance; or Practical MEDIN. Some modules are common to both streams, for example, modules on marine data management principles and components.

How data management relates to organisational management, data management planning, and data sharing and publishing, are included in the Governance stream, whereas detailed instruction on using the MEDIN metadata standard and guidelines ​to improve access to and reusability of data are included in the Practical MEDIN stream.

The course features interactive training and discussion sessions, quizzes, and assignments to help users become familiar with: 

  • Why data management is important and how it can and arguably should be part of an organisations business management framework alongside quality, occupational health and safety, and information security.
  • The role of a data policy and management plan, and how data can be shared, published and re-used. 
  • Data management principles, standards and components, including data lifecycle and quality, the role of vocabularies (or data dictionaries) and the importance of creating, maintaining and publishing metadata. 
  • The resources and other benefits of MEDIN and practical instruction in the use of the MEDIN data guidelines, metadata standard and controlled vocabularies.   
  • How data management ‘best practice’ can improve organisational efficiency in data acquisition, analysis, curation and sharing. It covers data use with respect to corporate risk, re-use, audit and traceability, whilst at the same time helping minimising costs. 

The course will equip attendees to better meet the challenge of keeping on top of the ever-increasing volumes and types of data that are being created and how to manage this data and make it available to users as meaningful information.

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 UK benthic imagery specialists working with MEDIN to develop imagery standards 

Attempting to standardise benthic imagery data has long been fraught with issues resulting from differences in imagery acquisition, annotation, analysis approaches and data formats. At the BIG PICTURE Workshop in 2019, benthic imagery specialists from across the UK came together to trouble-shoot these issues and propose solutions (Fig 1). A year later, in 2020, a coordinated Benthic Imagery Action Plan had been developed for the UK, endorsed by the Healthy and Biologically Diverse Seas Evidence Group (HBDSEG), aiming to achieve better standardisation of imagery data, incorporate new technology into work-flows and facilitate collaboration across organisations. 

Above: Figure 1. Participants of the Big Picture: Benthic Imagery Analysis Workshop 2019

As the benthic imagery specialists began to implement the Action Plan, working collaboratively as the ‘Big Picture Group’ now, it was clear that developing suitable data standards and flows was critical to unlocking the full potential of benthic imagery data – to be made available for mass access, data sharing and analysis by Artificial Intelligence algorithms. By working closely with MEDIN, a set of data standards and compliance measures have been developed, called the Quality Assurance Framework for benthic imagery (QAF), and will be trialled from April 2021 by the North East Atlantic Marine Biological Analytical Quality Control Scheme (NMBAQC).

In March 2021, the Big Picture Group will once again come together for the BIG PICTURE II Workshop to share progress towards the Benthic Imagery Action Plan, as well as to discuss the funding opportunities, global outreach possibilities and future challenges facing the Group. In addition to the QAF, the latest progress on benthic imagery data flows, standards and compliance will be shared by MEDIN representatives at the Workshop. By our continued collaboration, the Big Picture Group and MEDIN are developing shared solutions to the common issues affecting benthic imagery data standards and compliance, inter-operability and work.

By Dr Henk van Rein, Marine Natural Capital Evidence Specialist, Joint Nature Conservation Committee

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Scotland's Marine Assessment 2020 

Scotland's Marine Assessment 2020

Back in 2008, Scotland published a report on the state of the seas around Scotland.  This was followed, in 2011, by Scotland’s Marine Atlas: Information for the National Marine Plan.  On 21 December 2020, Scotland launched the ‘third instalment’ – Scotland’s Marine Assessment 2020 (SMA2020).  Although SMA2020 is based around assessing progress in delivering the vision of clean, healthy, productive and biologically diverse seas in a similar way to the Atlas, that is probably where the similarities end.  SMA2020 is presented on its own portal (Figure 2) with the only hard copy component being the Headlines and Next Steps which is a summary of the key findings.

Figure 2: An example of some of the topics presented on the on-line portal that together are Scotland’s Marine Assessment 2020.

Several areas have seen significant development since the Atlas.  These include:

  • Climate change
  • Natural capital, ecosystem services and the Blue Economy
  • Pressures from activities

In addition, reporting was, where possible, made against 11 new Scottish Marine Regions (SMRs) and 10 new Offshore Marine Regions (OMRs) (Figure 2).

The ‘Pressures from activities’ Topic summarises the top five pressures from human activities for each of the 11 SMRs and 10 OMRs using a bespoke process developed specifically for this purpose.

With approximately 250 authors, SMA2020 is a collaboration between the Scottish Government (Marine Scotland), NatureScot, the Marine Alliance for Science and Technology for Scotland (MASTS), the Joint Nature Conservation Committee (JNCC) and the Scottish Environment Protection Agency (SEPA). 

Figure 3: The Scottish Marine Regions (SMRs) and Offshore Marine Regions (OMRs)

Key: S1, Forth and Tay; S2, North East; S3, Moray Firth; S4 Orkney Islands, S5, Shetland Isles; S6, North Coast; S7, West Highlands; S8, Outer Hebrides; S9, Argyll; S10, Clyde; S11, Solway. O1, Long Forties, O2, Fladen and Moray Firth Offshore; O3, East Shetland Shelf; O4, North and West Shetland Shelf; O5, Faroe-Shetland Channel; O6, North Scotland Shelf; Hebrides Shelf; O8, Bailey; O9, Rockall; O10, Hatton.

Amongst the headline messages are:

  • Progress is being made in improving the state of Scotland’s seas especially in relation to contaminants. Eutrophication is not an issue in Scotland’s seas. There are mixed pictures for marine mammals, birds, fish and marine litter and there are signs of change in plankton. There are increasing pressures associated with non-indigenous species, climate change and ocean acidification, while the ability to draw conclusions about benthic habitats and underwater noise is limited by current knowledge
  • Climate change is the most critical factor affecting Scotland’s marine environment. Impacts are already being seen across the Scottish marine ecosystem.

A primary reason for producing SMA2020 was to provide the evidence base for a review of Scotland’s National Marine Plan later in 2021.  The ‘Next steps’ outline that future work on Scotland’s National Marine Plan will take an ecosystem-based approach to the protection of Scotland’s seas in the management of human activities.

Throughout SMA2020, relevance of the assessments to the United Nations Sustainable Development Goals (SDGs) has been highlighted while new ‘hexagon symbols’ (Figure 4) have been introduced to illustrate the ecosystem services that are obtained from Scotland’s Seas.

Figure 4: Examples of the ‘hexagon symbols’ introduced in SMA2020 to highlight the ecosystem services from Scotland’s seas including A. coastal protection and B. the production of oxygen.

SMA2020 has been subjected to rigorous internal and external peer review processes with a report from the external peer reviewers presented on the Portal.

There is no doubt that the ocean is changing as a result of human activities.  SMA2020 is a contribution to the evidence base that clearly illustrates what changes are occurring and where this happening.  However, it also shows that where action has been taken improvements are observed.

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New version of European Bathymetry Digital Terrain Model out now!
The European Marine Observation and Data Network (EMODnet) High Resolution Seabed Mapping Project, which has been running since 2009, has released an update of its Digital Terrain Model (DTM), which now includes greater coverage across European Seas and beyond.
Figure 5: Image courtesy of EMODnet @ www.emodnet.eu
“We are releasing the EMODnet Bathymetry 2020 DTM product, at the dawn of the United Nations Decade of Ocean Science for sustainable development, as a clear proof of the European contribution to the world seabed mapping effort. With this upgraded version of the EMODnet Bathymetry DTM, we allow users to have an easy and free access to high quality bathymetric data which can drastically improve their work.”, declared Thierry Schmitt from SHOM (Service Hydrographique et Océanographique de la Marine).

The EMODnet Bathymetry portal aims to provide a single access point to bathymetric products, Digital Terrain Models (DTM) and data (survey data sets and composite DTM).


OceanWise is a full partner in EMODnet and is proud to lead the UK contribution on this auspicious project.  OceanWise’s role is to process large volumes of sometimes overlapping hydrographic survey data from a variety of sources and to create a seamless seabed or bathymetric surface, or DTM, of the whole of the UK Continental Shelf.  A high-resolution version of the DTM is included in the OceanWise Marine Themes Marine Mapping data product and Web Map Tile Services (WMTS), while a sub-sampled lower resolution version is submitted to EMODnet for inclusion in the European Seas DTM which then also contributes to the General Bathymetric Chart of the Oceans (GEBCO) and the Seabed 2030 project. Other partners in EMODnet adopt a similar approach. 

As well as the DTM, OceanWise processes and corrects large volumes of metadata and outputs this in a format compatible with the SeaDataNet project. The metadata is linked to the DTM, so the source or provenance of the data is always apparent and maintained.

Read our article on the project and the work that we have done here.

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Is NERC research data accessible? 

Why have we suddenly asked this question? Following the Natural Environment Research Council (NERC) COVID-19 hackathons it was realised a lot of data sources are used for environmental challenges, but not always data that are publicly available following UK Research and Innovation (UKRI)-funded research. Given our aim is to follow the FAIR (Findable, Accessible, Interoperable, Reusable) principles we decided it was time to collect information to help us improve.

The first trail was run as an 8-question online Digital Trail quiz from 25th November to 2nd December 2020. The questions navigated water quality data and metadata held by the British Oceanographic Data Centre (BODC) and the UK Centre for Ecology and Hydrology (UKCEH) UKSCAPE project. The aim was to find the data or metadata to answer each question and give it a rating to assess how easy or difficult it was to find. For us the feedback on information accessibility was most important and will be used to steer future data delivery plans. 

Promotion worked well with 478 views of the site during the event suggesting there’s lots of interest in environmental data sources and the quizzes are a good way to raise awareness of data archives. One of our water bottle winners said – "it’s always nice to find out new ways for finding data". However, out of those views we had 72 participants, mainly from early career academic backgrounds. This indicated the style of the quiz was maybe a little off putting to the general public. Given we set out to target academics and data users this time, we are happy with the uptake and will consider a different approach to make future quizzes more appealing to a wider audience. After the first 24 hours we realised not everyone participating was submitting final results. We quickly clarified that if the answer was too difficult to find, tell us in the feedback and carry on. All participants then continued to submit their feedback. In total we received 66 results.

If you missed out this time, not to worry there will be more trails in 2021 with opportunities to win a NERC water bottle or £100. Keep an eye on our website or opt in for an email alert when a quiz goes live here.

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New vocabulary for marine phytoplakton measured by flow cytometry

Phytoplankton are microscopic marine algae, who similar to terrestrial plants, obtain energy through photosynthesis, contain chlorophyll and require sunlight to live and grow. As the phytoplankton form an important base for marine and freshwater food webs and are also key components in the global carbon cycle, monitoring their abundance, diversity, and changes in response to climate variation is increasingly important to inform global climate related decision making*.

Figure 6 above; Two flow cytometers (Cytosense, Cytobuoy-NL) side by side, connected to a FerryBox flowing seawater supply, measuring phytoplankton diversity every hour during a survey in 2016 on the Research Vessel Cefas Endeavour. Image Crown Copyright © 2021.

Flow cytometry technology (FCM)** is now a well-established tool in phytoplankton analysis and over the last 40 years scientists have shown that phytoplanktonic communities are not restricted to what can be seen under a microscope. Photosynthetic organisms smaller than a micrometre are also abundant and three divisions of the phytoplankton functional types based on size are very well known. These are, the picophytoplankton (<2µm), nanophytoplankton (2-20µm), and micro-phytoplankton (>20µm). Until recently though, little effort had been made to establish a common vocabulary to define the groups inside these divisions and consequently, a wide variety of names have been used for identical groups. To improve the findability, accessibility, interoperability and reuse (the FAIR data principles) of the flow cytometry data across the scientific community it is therefore essential to address this issue as part of efforts to establish good practices in data management.

International experts in collaboration have therefore recently defined a new vocabulary describing 11 groups of phytoplankton functional types and the newly defined names and definitions are now available from the British Oceanography Data Centre (BODC). This can be found here. The next step will be to harmonise already existing metadata (information about the data), and improve the data flow from collection using the flow cytometry technology, to archival storage and ‘open’ sharing links into for example European infrastructures such as SeaDataNet and EMODnet Biology, and internationally such as OBIS.

This work would not have been possible without the collaboration of the growing community of phytoplankton experts and operators in flow cytometry including staff from Cefas, BODC and other MEDIN partners, together with financial support from SeaDataCloud (H2020-EU.1.4.1.2; ID: 730960), JERICO-NEXT (H2020-EU.1.4.1.2; ID: 654410), and JERICO-S3 (H2020-EU.1.4.1.2.; ID: 871153).

*Timely given the UK will host the 26th UN Climate Change Conference of the Parties (COP26) later this year. For further information on COP26 see LINK

 ** Flow Cytometry Technology (FCM) measures the optical properties of single cells (particles) in alignment as they cross a light source excitation. Fluorescence and light scattering intensities per cell are then recorded to determine the abundance of functional types, in this case, marine phytoplankton. For further reading and background see HERE.

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The Ocean in a Changing Climate
The Earth’s climate system is undergoing unprecedented change impacting nature and societies across the globe. At the heart of this system is the ocean. Given the criticality of climate change and the role of the ocean within the climate system, the UK Marine Science Co-ordination Committee (MSCC) has released a Statement highlighting the importance of the ocean and how it impacts the economy, food security, societal wellbeing, jobs and climate change resilience. The MSCC Statement summarises the impact of marine climate change in the UK, the role the UK plays in maritime and polar research, and the next steps.

With full support from the MSCC Co-Chairs (Marine Scotland Chief Scientific Advisor and Defra Deputy Director) as well as a unanimous backing at the last MSCC plenary in September (where committee members in attendance included Defra Chief Scientific Advisor, high level policy makers from across UK government and leaders of various UK marine institutes), the MSCC has released this Statement. Led by Dr Tarquin Dorrington (Head of Ocean Climate and International Science at Defra), the MSCC have now publicised this Statement to highlight the importance of the ocean in a changing climate. The Statement draws out a number of important points, such as:
 
Climate impacts

  • Mean sea level rise of 12-16 cm since 1900 and predictions sea level rise will accelerate over the next eighty years
  • Shift in marine species distributions and degradation of marine ecosystems due to warming and a change in ocean chemistry
  • Increase risk of damage to homes and infrastructure
  • Negative impacts of individual and societal health and wellbeing
Role of the UK in maritime and polar research
  • Funding state of the art ships, sensors, drones and satellites, all of which play a role in understanding the range and scale of climate change
  • Research of natural and social sciences, from polar seas to tropical waters
  • Lead and participate in marine international initiatives
  • Having a key role in international initiatives to monitor the Atlantic Meridional Overturning Circulation (AMOC) – a important driver of climate in North-West Europe
 Next steps
  • The UK is co-hosting COP26 and hosting the G7 Presidency in 2021, it is also the start of the UN Decade of Ocean Science for Sustainable Development – all these require continued evidence for policy and action
  • Understanding key challenges and emerging issues surrounding climate change
  • Researching societal impacts of climate change in the future
  • Continued work on climate projections, ocean acidification and climate mitigation and adaptation measures
Read the full climate statement here
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Can you take on the Climate Data Challenge?

The Met Office and partners are hosting a virtual hackathon aimed at finding new ways to use data to help towards tackling climate change challenges and developing sustainable opportunities. We would like you to join us and other key stakeholders for the two-day event on 16-17 March.
  
If you would like to grow your network by working alongside other experts to tackle some of the most challenging issues of the day, the Climate Data Challenge is the perfect opportunity. The event will bring people with diverse skill sets and backgrounds together to make progress on a shared project with the ultimate aim of making society more resilient. This is likely to include combining information from a range of datasets to create new tools as well as thinking about how best to visualise the outputs to make them as engaging as possible. 
While hackathons typically attract software engineers, data scientists and scientists, we believe that everyone has a part to play. So, if you have a passion for one of the themes below and feel that you have relevant skills or knowledge, then please sign up.
  
Challenge themes:
1. Marine and coastal
2. Nature-based solutions
3. Sustainable development

  
Working in teams, the most relevant outputs will have the opportunity to be showcased at COP26 in Glasgow in November 2021, which will attract Heads of State, policy makers, scientists and other stakeholders from almost every nation in the world.
 
The hackathon will be delivered virtually and make use of a range of tools to share information and encourage collaboration between teams.
 
On the afternoon of Tuesday 2 March we will be hosting a virtual pre-event where you can find out more about the challenges, form teams and learn about the data that may be relevant.
Register here >>

Further information on the Climate Data Challenge can be found on GitHub. This will be updated over the coming weeks with additional information.  If you are interested in the outputs from the Climate Data Challenge but are unable to take part, please email us at cop26@metoffice.gov.uk so that we can keep you informed.

All are welcome at this event. The Met Office recognises that Great Minds Don’t Think Alike and is committed to working towards being a more diverse and inclusive organisation. We see diversity as a positive and value visible and invisible individual differences.

More Events!

Citizen science call - we're shore you'll love it!

A new citizen science project launched in January is inviting the public to help recover data from historic tide gauge ledgers from the North West of England and convert it into usable data by scientists. 

The National Oceanography Centre’s (NOC) Permanent Service for Mean Sea Level (PSMSL) dataset is used globally to study climate change and sea level rise by many organisations including the Intergovernmental Panel on Climate Change (IPCC). 

NOC’s Head of PSMSL and Marine Data Manager, Elizabeth Bradshaw, is coordinating the project, and commented “Around 3 million people live near the coast in the UK, and with global sea level rising, we need long records to be able to investigate how local tides and sea level are changing. One way this can be done is by recovering data from old documents. In this project, we are trying to convert data from old tide gauge ledgers from two locations in the North West of England into data usable by scientists.” 

Volunteers can participate in the project through the Zooniverse website, and undertake as much or as little as they like. The task is simple, view images of the hand-written ledgers and add the figures you see into the corresponding columns on the online form. 

Read more about the history of tidal science in Liverpool on our website Tide and Time.  
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News
10 years of EMODnet in 10 minutes
Check out this short documentary film which captures the EMODnet story over the last ten years. It tracks the journey from its launch, to where it is now and where it will go next.

EMODnet is a network of people and so despite being immersed in a global pandemic, interviews were gathered from some of those who were instrumental in the early years of EMODnet, those who have made it what it is today and those who use EMODnet and rely on it as an operational service. 

So tune in and hear all about EMODnet, curating the past, capturing the present and charting the future!

More information is available here;
 

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